<ms_alignment>
<newick>
(sequence1:0.83938,(sequence2:0.23397,sequence3:0.25766):0.62432,((sequence4:0.25388,sequence5:0.26355):1.22697,(sequence6:0.14972,sequence7:0.12476):0.83315):0.15785);
</newick>
<nodes>
	<leaf id="sequence1" name="Human MERS Bcov spike">
		<sequence>
		MIHSVFLLMFLLTPTESYVDVGPDS------VKSACIEVDIQQTFFDKTW---PRPIDVSKADGIIYPQGRTYSNITITYQG--LFPYQGDHGDMYVYSAGHATGTTPQKLFVANYSQDVKQFANGFVVRIGAAANSTGTVIISPSTSATIRKIYPAFMLGSSVGNFSDGKMGRFFNHTLVLLPDGC----------GTLLRAFYCILEPRSGNHCPAGNSYTSFATYHTPATDCSDGNYNRNASLNSFKEYFNLRNCTFMYTYN------------------ITEDEILEW--FGITQTAQGVHLFSSRYVDLYGGNMFQFATLPVYDTIKYYSIIPH--SIRSIQSDRKA---W----AAFY---VYKLQPLTFLLDFSVDGYIRRAIDCGFNDLSQLHCSYESFDVESGVYSVSSFEAKPSGSVVEQAEGVE--CDFSP----LLSGTP-PQVYNFKRLVFTNCNYNLTKLLSLFSVNDFTCS-QISPAAIASNCYSSLILDYFSYPLSMKSDLSVS--SAGPISQFNYKQSFSNPTCLILATVPH--------NLTTITKPLKY--------------------------------------SYINKCSRLLSDDRT---------EVP-QLVNANQYSPCVSI------------VPS---TVWEDGDYYRKQLS-------------------------------PLEGGGWLVASGSTVAMTEQLQMGFGITVQYGTDTNSVCPKLEFANDTKIASQLGNCVEYSLYGVSGRGVFQNCTAVGV-RQQRFVYDAYQNLVGYYS-DDGNYYCLRACVSVPVSVIY--DKETKTHATLFGSVACEHISSTMSQYSRSTRSMLKRRDSTYGPLQTPVG--CVLGLVNSSLF-VEDCKLPLGQSLCALPDTPSTLTPRSVR-SVPGEMRLASIAFNHPIQVDQLNSS------YFKLSIPTNFSFGVTQEYIQTTIQKVTVDCKQYVCNGFQKCEQLLREYGQFCSKINQALHGANLRQDDSVRNLFASVKSSQSSPIIPGFGGDF-----NLTLLEPVSISTGSR-SARSAIEDLLFDKVTIADPGYMQG-YDDCMQQGPASARDLICAQYVAGYKVLPPLMDVNMEAAYTSSLLGSIAGVGWTAGLSSFAAIPFAQSIFYRLNGVGITQQVLSENQKLIANKFNQALGAMQTGFTTTNE--------------AFQKVQDAVNNNAQALSKLASELSNTFGAISASIGDIIQRLDVLEQDAQIDRLINGRLTTLNAFVAQQLVRSESAALSAQLAKDKVNECVKAQSKRSGFCGQGTHIVSFVVNAPNGLYFMHVGYYPSNHIEVVSAYGLCDAANPTNCIAPVNGYFIKTNNTRIVDEWSYTGSSFYAPEPITSLNTKYVAP-QVTYQNISTNLPPPLLGNSTGIDFQDELDEFFKNVST-SIPNFG-SLTQINTTLLDLTYEML--------------SLQQVVKALNESYIDLKELGNYTYYNKWPWYIWLGFIAGLVALALCVFFILCCTGCGTNCMG-KLKCNRCCD-RYEEY--DLEPHKVHVH
		</sequence>
	</leaf>
	<leaf id="sequence2" name="Human OC43 Bcov spike">
		<sequence>
		----MFLILLISLPT-AFAVIGD--------LKCTSDNINDKDTGPPPIS---TDTVDVTNGLGTYYVLDRVYLNTTLFLNG--YYPT---SGSTYRNMALKGSVLLSRLWFKPPFLSD---FINGIFAKVKNTKVIKDRVMYSE---------FPAITIGSTFVNTS---------YSVVVQPRTINSTQDGDNKLQGLLEVSVC-----------------QYNMCEYPQTIC---HPNLGNHRKELWHLDTGVVSCL-YKRN------------------FTYDVNADYLYFHFYQEGGTFYAY---FTDTGVVTKF-LFNVYLGMALSHYYVMPL--TCNSKLT------------LEYW---VTPLTSRQYLLAFNQDGIIFNAVDCMSDFMSEIKCKTQSIAPPTGVYELNGYTVQPIADVYRRKPNLPN-CNIEA----WLNDKSVPSPLNWERKTFSNCNFNMSSLMSFIQADSFTCN-NIDAAKIYGMCFSSITIDKFAIPNGRKVDLQLG--NLGYLQSFNYRIDTTATSCQLYYNLPAANVSVSRFNPSTWNKRFGFIEDSVFKPRPAGVLTNHDVVYAQHCFKAPKNFCPC---KLNGSCVGSGPGKNN------GIGTCP----AGTNYLTCDNL------------CTPDPITFTGTYKCPQTKSLVGIGEHCSGLAVKSDYCG------GNSCTCRPQAFLGWSADS-CLQGDKCNI---FANFILHDVNSGLTCSTDLQKANTDII--LGVCVNYDLYGILGQGIFVEVNATYYNSWQNLLYDSNGNLYGFRDYITNRTFMIRSCYSGRVSAAF--HANSSEPALLFRNIKCNYVFN--------NSLTRQLQPINY--FDSYLG--CVVNAYNSTAISVQTCDLTVGSGYCVDY-----SKNRRSRGAITTGYRFTNF---EPFTVNSVNDSLEPVGGLYEIQIPSEFTIGNMVEFIQTSSPKVTIDCAAFVCGDYAACKSQLVEYGSFCDNINAILTEVNELLDTTQLQVANSLMNGVTLSTKLKDGVNFNVDDINFSPVLGCLGSECSKASSRSAIEDLLFDKVKLSDVGFVEA-YNNCT--GGAEIRDLICVQSYKGIKVLPPLLSENQISGYTLAATSASLFPPWTAA----AGVPFYLNVQYRINGLGVTMDVLSQNQKLIANAFNNALYAIQEGFDATNS--------------ALVKIQAVVNANAEALNNLLQQLSNRFGAISASLQEILSRLDALEAEAQIDRLINGRLTALNAYVSQQLSDSTLVKFSAAQAMEKVNECVKSQSSRINFCGNGNHIISLVQNAPYGLYFIHFSYVPTKYVTARVSPGLCIAGD--RGIAPKSGYFVNVNNT-----WMYTGSGYYYPEPITENNVVVMSTCAVNYTKAPYVMLNTSIPNL--PDFKEELDQWFKNQTS-VAPDL--SLDYINVTFLDLQVEMN--------------RLQEAIKVLNQSYINLKDIGTYEYYVKWPWYVWLLICLAGVAMLVLLFFICCCTGCGTSCFK---KCGGCCD-DYTGY-QELVIKTSHDD
		</sequence>
	</leaf>
	<leaf id="sequence3" name="Human HKU1 Bcov spike">
		<sequence>
		----MLLIIFILPTT--LAVIGD--------FNCTNFAINDLNTTVPRIS---EYVVDVSYGLGTYYILDRVYLNTTILFTG--YFPK---SGANFRDLSLKGTTYLSTLWYQKPFLSD---FNNGIFSRVKNTKLYVNKTLYSE---------FSTIVIGSVFINNS---------YTIVVQPH------------NGVLEITAC-----------------QYTMCEYPHTIC----KSKGSSRNESWHFDKSEPLCL-FKKN------------------FTYNVSTDWLYFHFYQERGTFYAY---YADSGMPTTF-LFSLYLGTLLSHYYVLPL--TCNAISSNTDNE------TLQYW---VTPLSKRQYLLKFDNRGVITNAVDCSSSFFSEIQCKTKSLLPNTGVYDLSGFTVKPVATVHRRIPDLPD-CDIDK----WLNNFNVPSPLNWERKIFSNCNFNLSTLLRLVHTDSFSCN-NFDESKIYGSCFKSIVLDKFAIPNSRRSDLQLG--SSGFLQSSNYKIDTTSSSCQLYYSLPAINVTINNYNPSSWNRRYGF---------NNFNLSSHSVVYSRYCFSVNNTFCPCAKPSFASSCKSHKPPSAS----------CP----IGTNYRSCESTTVLDHTDWCRCSCLPDPITAYDPRSCSQKKSLVGVGEHCAGFGVDEEKCGVLDGSYNVSCLCSTDAFLGWSYDT-CVSNNRCNI---FSNFILNGINSGTTCSNDLLQPNTEVF--TDVCVDYDLYGITGQGIFKEVSAVYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYAGRVSAAF--HQNASSLALLYRNLKCSYVLN-----------NISLTTQPY--FDSYLG--CVFNADNLTDYSVSSCALRMGSGFCVDYNSPSSSSSRRKRRSISASYRFVTF---EPFNVSFVNDSIESVGGLYEIKIPTNFTIVGQEEFIQTNSPKVTIDCSLFVCSNYAACHDLLSEYGTFCDNINSILDEVNGLLDTTQLHVADTLMQGVTLSSNLNTNLHFDVDNINFKSLVGCLGPHCGS-SSRSFFEDLLFDKVKLSDVGFVEA-YNNCT--GGSEIRDLLCVQSFNGIKVLPPILSESQISGYTTAATVAAMFPPWSAA----AGIPFSLNVQYRINGLGVTMDVLNKNQKLIATAFNNALLSIQNGFSATNS--------------ALAKIQSVVNSNAQALNSLLQQLFNKFGAISSSLQEILSRLDALEAQVQIDRLINGRLTALNAYVSQQLSDISLVKFGAALAMEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFMHFSYKPISFKTVLVSPGLCISGD--VGIAPKQGYFIKHNDH-----WMFTGSSYYYPEPISDKNVVFMNTCSVNFTKAPLVYLNHSVPKL--SDFESELSHWFKNQTS-IAPNLTLNLHTINATFLDLYYEMN--------------LIQESIKSLNNSYINLKDIGTYEMYVKWPWYVWLLISFSFIIFLVLLFFICCCTGCGSACFS---KCHNCCD-EYGGH-HDFVIKTSHDD
		</sequence>
	</leaf>
	<leaf id="sequence4" name="Human 229E Acov spike">
		<sequence>
		----MFVLLVA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YALLHIAGC-----------------Q--------------------TTNGLNTSYSVCNGCVGYSENVFAVESGGYIPSD-----FAFNN---W--FLLTNTSSVVDGVVRSFQPLLLNCLWSVSGLRFTTGFVYFNGTGRG-DCKGFSSDVLSD--VIRYNLNFE----ENLRRGTILFKTSYGVVVFYCTNNTLVSG-DAHIPFGTVLGNFYCFVNTTIGNETTSAFVGALPKTVREFVISRTGHFYINGYRYFTLGNVEAVNFNVTTAETTDFCTVALASYADVLVNVSQTSIANIIYCNSVINRLRC-DQLSFDVPDGFYSTSPIQSV--ELPVSIVSLPVYHKHTFIVLYVDFKPQSGGGKCFNCYPAGVNITLANFNETKGPLCVDTSHFTT----------KYVAVYANVGRWSAS-----INTGNCPFSFGKVNNFVKFGSV------------CFS---LKDIPGGCAM-----------------------------------PIV-ANWAYSKYYTIG---SL---YVSWSDGDGITGVPQPVEGVSSFMNVT--LDKCTKYNIYDVSGVGVIRVSNDTFLNGITYT--STSGNLLGFKDVTKGTIYSITPCNPPDQLVVY----QQAVVGAMLSENFTSYGFS-----------NVVELPKFF--YASNGTYNCTDAVLTYSSF-----------GVCADGSIIA-VQPRNVSYDSVSAIVTAN------------------------LSIPSNWTTSVQVEYLQITSTPIVVDCSTYVCNGNVRCVELLKQYTSACKTIEDALRNSARLESADVSEMLTFDKKAFTLANVSSFG-DY-----NLSSVIPSLPTSGSRVAGRSAIEDILFSKLVTSGLGTVDADYKKCT--KGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGIALGGLTSA----VSIPFSLAIQARLNYVALQTDVLQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVNQQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDTIQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQLAQQKVNECVKSQSKRYGFCGNGTHIFSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGT--NGYVLRQPNLALYKEGNY---YRITSRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEY--IDVNKTLQELSYKLPNYTVPDL--VVEQYNQTILNLTSEISTLENKSAELNYTVQKLQTLIDNINSTLVDLKWLNRVETYIKWPWWVWLCISVVLIFVVSMLLLCCCSTGCCGFFSCFASSIRGCCE--STKL-PYYDVEKIHIQ
		</sequence>
	</leaf>
	<leaf id="sequence5" name="Human NL63 Acov spike">
		<sequence>
		--MKLFLILLVLPLASCFFTCNSNANLSMLQLGVPDNSSTIVTGLLPTHWFCANQSTSVYSANGFFYIDVGNHRSAFALHTG--YYDANQYYIYVTNEIGLNASVTLKICKFSRNTTFD-------FLSNASSSFDCIVNLLFTEQLGAPLGITISGETVRLHLYNVT---------RTFYVPAA------------YKLTKLSVK-----------------CYFNYSCVFSVVNATVTVNVTTHNGRVVNYTVCDDCNGYTDNIFSVQQDGRIPNG-----FPFNN---W--FLLTNGSTLVDGVSRLYQPLRLTCLWPVPGLKSSTGFVYFNATGSDVNCNGYQHNSVVD--VMRYNLNFSANSLDNLKSGVIVFKTLQYDVLFYCSNSSSGVL-DTTIPFGPSSQPYYCFINSTINTTHVSTFVGILPPTVREIVVARTGQFYINGFKYFDLGFIEAVNFNVTTASATDFWTVAFATFVDVLVNVSATNIQNLLYCDSPFEKLQC-EHLQFGLQDGFYSANFLDDN--VLPETYVALPIYYQHTDINFTA---TASFGGSCYVCKPHQVNISLNG----NTSVCVRTSHFSI----------RYIYNRVKSGSPGDSSWHIYLKSGTCPFSFSKLNNFQKFKTI------------CFS---TVEVPGSCNF-----------------------------------PLE-ATWHYTSYTIVG---AL---YVTWSEGNSITGVPYPVSGIREFSNLV--LNNCTKYNIYDYVGTGIIRSSNQSLAGGITYV--SNSGNLLGFKNVSTGNIFIVTPCNQPDQVAVY----QQSIIGAMTAVNESRYGLQ-----------NLLQLPNFY--YVSNGGNNCTTAVMTYSNF-----------GICADGSLIP-VRPRNSSDNGISAIITAN------------------------LSIPSNWTTSVQVEYLQITSTPIVVDCATYVCNGNPRCKNLLKQYTSACKTIEDALRLSAHLETNDVSSMLTFDSNAFSLANVTSFG-DY-----NLSSVLPQRNIRSSRIAGRSALEDLLFSKVVTSGLGTVDVDYKSCT--KGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGMVLGGLTSA----AAIPFSLALQARLNYVALQTDVLQENQKILAASFNKAINNIVASFSSVNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHLTSQLRHNFQAISNSIQAIYDRLDSIQADQQVDRLITGRLAALNAFVSQVLNKYTEVRGSRRLAQQKINECVKSQSNRYGFCGNGTHIFSIVNSAPDGLLFLHTVLLPTDYKNVKAWSGICVDGI--YGYVLRQPNLVLYSDNGV---FRVTSRVMFQPRLPVLSDFVQIYNCNVTFVNISRVELHTVIPDY--VDVNKTLQEFAQNLPKYVKPNF--DLTPFNLTYLNLSSELKQLEAKTASLFQTTVELQGLIDQINSTYVDLKLLNRFENYIKWPWWVWLIISVVFVVLLSLLVFCCLSTGCCGCCNCLTSSMRGCCDCGSTKL-PYYEFEKVHVQ
		</sequence>
	</leaf>
	<leaf id="sequence6" name="Human SARS Bcov spike">
		<sequence>
		----MFIFLLFLTLT----------------SGSDLDRCTTFDDVQAP-----NYTQHTSSMRGVYYP-DEIFRSDTLYLTQDLFLPF---YSNVTGFHTINHT-------FGNPVIP----FKDGIYFAATEKSNV-----------------VRGWVFGSTMNNKS---------QSVIIINN------------STNVVIRAC-----------------NFELCDNPFFAV----SKPMGTQTHTMIFDNAFNCTFEYISDAFSLDVSEKSGNFKHLREFVFKNKDGF--LYVYKGYQPIDVV--RDLPSGFNTLKPIFKLPLGINITNFRAILT-----AFSPAQDI---WGTSAAAYF---VGYLKPTTFMLKYDENGTITDAVDCSQNPLAELKCSVKSFEIDKGIYQTSNFRVVPSGDVV-RFPNITNLCPFGE----VFNATKFPSVYAWERKKISNCVADYSVLYNSTFFSTFKCY-GVSATKLNDLCFSNVYADSFVVKGDDVRQIAPG--QTGVIADYNYKLPDDFMGCVLAWNTRNID--------ATSTGNYNY--------------------------------------KYRYLRHGKLRPFER------DISNVP--------FSPDGKP------------CTP------PALNCYW-----------------------------------PLN----DYGFYTTTGIGYQP---YRVVVLSFELLNAPATVCGPKLSTDLI--KNQCVNFNFNGLTGTGVLTPSSKRFQ-PFQQFGRDVSDFTDSVRDPKTSEILDISPCAFGGVSVITPGTNASSEVAVLYQDVNCTDVSTAIHADQLTPAWRIYSTGNNV--FQTQAG--CLIGAEHVDTS--YECDIPIGAGICASYHTVS-----LLRSTSQKSIVAYTMSLGADSSIAYSNNT---------IAIPTNFSISITTEVMPVSMAKTSVDCNMYICGDSTECANLLLQYGSFCTQLNRALSGIAAEQDRNTREVFAQVKQMYKTPTLKYFG-GF-----NFSQILP----DPLKPTKRSFIEDLLFNKVTLADAGFMKQ-YGECL--GDINARDLICAQKFNGLTVLPPLLTDDMIAAYTAALVSGTATAGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKQIANQFNKAISQIQESLTTTST--------------ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQAAPHGVVFLHVTYVPSQERNFTTAPAICHEG---KAYFPREGVFVFNGTS-----WFITQRNFFSPQIITTDNTFVSGNCDVVIGIINNTVYDPLQPEL--DSFKEELDKYFKNHTS-PDVDLG-DISGINASVVNIQKEID--------------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYVWLGFIAGLIAIVMVTILLCCMTSCCSCLKG-ACSCGSCCKFDEDDSEPVLKGVKLHYT
		</sequence>
	</leaf>
	<leaf id="sequence7" name="Human SARS2 Bcov spike">
		<sequence>
		----MFVFLVLLPL-----------------VSSQCVNLTTRTQLPPAYT--------NSFTRGVYYP-DKVFRSSVLHSTQDLFLPF---FSNVTWFHAIHVSGTNGTKRFDNPVLP----FNDGVYFASTEKSNI-----------------IRGWIFGTTLDSKT---------QSLLIVNN------------ATNVVIKVC-----------------EFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGY--FKIYSKHTPINLV--RDLPQGFSALEPLVDLPIGINITRFQTLLA--LHRSYLTPGDSSSGWTAGAAAYY---VGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIV-RFPNITNLCPFGE----VFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCY-GVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG--QTGKIADYNYKLPDDFTGCVIAWNSNNLD--------SKVGGNYNY--------------------------------------LYRLFRKSNLKPFER---------DIS-----TEIYQAGSTP------------CNG-----VEGFNCYF-----------------------------------PLQ----SYGFQPTNGVGYQP---YRVVVLSFELLHAPATVCGPKKSTNLV--KNKCVNFNFNGLTGTGVLTESNKKFL-PFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNV--FQTRAG--CLIGAEHVNNS--YECDIPIGAGICASYQTQT-NSPRRARSVASQSIIAYTMSLGAENSVAYSNNS---------IAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFG-GF-----NFSQILP----DPSKPSKRSFIEDLLFNKVTLADAGFIKQ-YGDCL--GDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTAS--------------ALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDG---KAHFPREGVFVSNGTH-----WFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL--DSFKEELDKYFKNHTS-PDVDLG-DISGINASVVNIQKEID--------------RLNEVAKNLNESLIDLQELGKYEQYIKWPWYIWLGFIAGLIAIVMVTIMLCCMTSCCSCLKG-CCSCGSCCKFDEDDSEPVLKGVKLHYT
		</sequence>
	</leaf>
</nodes>
</ms_alignment>